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rs228355879 SNP Detail
Summary
  • ID
    rs228355879
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:49023579 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCAACTGAG GCTAAATTTT
CAAAATCTGC TCCAGTTGAG TAACTCCTGG ATATCTAAAG GTTTTGTCCT TTCTCAGAGA
GCATCCTTTT ATTCAGCATT AACAAAGCAC ACCCACTGAA CAAAGCACAG AATAGGCCGG
GTATCATGCA GGTCTGAAAC CAGCTTTCTT GGTGCCATGG TGGCTCTGTG GTCAGTTCTC
Y
AAGCCTATCA CTCATTGACC TGCCACAGCT GTGGCCAGCA CCTGTGAGTT TCAGGGACAG
CTGCAGAGGG AAACGGAATG ACTCAGATGT GTTCCCGTGG GCAGTCTGTT CCCTTCATAT
CTGTGATCCG TATCTGTGAT CTGCTGTTGC CCTTTCATGT CTTGCTGGTT TTCAGTACAA
GTCCTTCTAG GAAGAGGAAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368235205 MGP_WTSI_6_48996644 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228355879 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368235205 MGP_WTSI_6_48996644 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49023579 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D6Dcr8 DNA Segment, Chr 6, Derry C. Roopenian 8 195 bp distal
D6Mit142 DNA segment, Chr 6, Massachusetts Institute of Technology 142 207 bp distal
Gm56981 predicted gene, 56981 within coordinates
Gpnmb glycoprotein (transmembrane) nmb within coordinates
Tssr56319 transcription start site region 56319 1328 bp downstream
Tssr56320 transcription start site region 56320 1288 bp downstream
Tssr56321 transcription start site region 56321 1274 bp downstream
Tssr56322 transcription start site region 56322 1256 bp downstream
Tssr56323 transcription start site region 56323 1220 bp downstream
Tssr56324 transcription start site region 56324 1190 bp downstream
Tssr56325 transcription start site region 56325 1034 bp downstream
Tssr56326 transcription start site region 56326 1019 bp downstream
Tssr56327 transcription start site region 56327 965 bp downstream
Tssr56328 transcription start site region 56328 887 bp downstream
Tssr56329 transcription start site region 56329 811 bp downstream
Tssr56330 transcription start site region 56330 640 bp downstream
Tssr56331 transcription start site region 56331 595 bp downstream
Tssr56332 transcription start site region 56332 522 bp downstream
Tssr56333 transcription start site region 56333 484 bp downstream
Tssr56334 transcription start site region 56334 474 bp downstream
Tssr56335 transcription start site region 56335 454 bp downstream
Tssr56336 transcription start site region 56336 427 bp downstream
Tssr56337 transcription start site region 56337 404 bp downstream
Tssr56338 transcription start site region 56338 388 bp downstream
Tssr56339 transcription start site region 56339 374 bp downstream
Tssr56340 transcription start site region 56340 184 bp downstream
Tssr56341 transcription start site region 56341 65 bp upstream
Tssr56342 transcription start site region 56342 97 bp upstream
Tssr56343 transcription start site region 56343 647 bp upstream
Tssr56344 transcription start site region 56344 661 bp upstream
Tssr56345 transcription start site region 56345 679 bp upstream
Tssr56346 transcription start site region 56346 716 bp upstream
Tssr56347 transcription start site region 56347 754 bp upstream
Tssr56348 transcription start site region 56348 780 bp upstream
Tssr56349 transcription start site region 56349 1103 bp upstream
Tssr56350 transcription start site region 56350 1130 bp upstream
Tssr56351 transcription start site region 56351 1160 bp upstream
Tssr56352 transcription start site region 56352 1173 bp upstream
Tssr56353 transcription start site region 56353 1242 bp upstream
Tssr56354 transcription start site region 56354 1257 bp upstream
Tssr56355 transcription start site region 56355 1282 bp upstream
Tssr56356 transcription start site region 56356 1300 bp upstream
Tssr56357 transcription start site region 56357 1312 bp upstream
Tssr56358 transcription start site region 56358 1330 bp upstream
Tssr56359 transcription start site region 56359 1345 bp upstream
Tssr56360 transcription start site region 56360 1382 bp upstream
Tssr60846 transcription start site region 60846 1253 bp upstream
Tssr60847 transcription start site region 60847 1170 bp upstream
Tssr60848 transcription start site region 60848 237 bp upstream
Tssr60849 transcription start site region 60849 684 bp downstream
Tssr60850 transcription start site region 60850 739 bp downstream
Tssr60851 transcription start site region 60851 1209 bp downstream
Tssr60852 transcription start site region 60852 1252 bp downstream
Tssr60853 transcription start site region 60853 1262 bp downstream
Tssr60854 transcription start site region 60854 1281 bp downstream
Tssr60855 transcription start site region 60855 1314 bp downstream
Tssr60856 transcription start site region 60856 1352 bp downstream
Tssr60857 transcription start site region 60857 1381 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory