rs228357672 SNP Detail

Summary

• ID
  rs228357672
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20513499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTTCC AGGACAGCCA
  GGGCTACACA GAGAAACCCT GTCTCGAAAA AAAAAAAAAA AGAAGAAGTG GCAGGGCGCT
  CTGACTCCTG GTCTGCACGG AGTTCAGGAA GTCATCCTCT CCTGTAGTCA GGGAAGAGTG
  TGACTGACCT CAGGACTGGC CTTGAGTACC AGGTAGGCGT CTGGCATAGC CAGTAACCTG
  W
  TTTCTTTCTG GTTGGTAGCA TTTCTGGGGA CCACCAACTG GCTGAGGCCC AGGGACAGAG
  ACGTCTGCTC CAGCTAAAAG GTTAGTTGTG ATGTACGTGG CCAGTTGGCA CTGTGTAAGC
  TAAGATGAGC CTCAGCCCCA CAAGCCAGAG AACTTGGCGA GGTCCCTGGC ACTCCCACTT
  CCTCAAAGCT ATGAGACAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395578806	MGP_WTSI_16_20694822	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228357672					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395578806	MGP_WTSI_16_20694822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20513499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	993 bp distal
Cpgi8084	CpG island 8084	906 bp proximal
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	1866 bp downstream
Fam131a	family with sequence similarity 131, member A	within coordinates
Tssr137487	transcription start site region 137487	1427 bp downstream
Tssr137488	transcription start site region 137488	1402 bp downstream
Tssr137489	transcription start site region 137489	251 bp upstream
Tssr137490	transcription start site region 137490	268 bp upstream
Tssr137491	transcription start site region 137491	292 bp upstream
Tssr137492	transcription start site region 137492	1430 bp upstream