rs228369376 SNP Detail

Summary

• ID
  rs228369376
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18998518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCATCTA ACCTTCCAAG
  GCCTCTAGGG CGTTGGCCAT GCCTGTTGCA AACTGTATGG CGTCCTCCTT GCTGCCGAAG
  TTGAGGCCCC AGACCTGGCG GGCATCTCGC CACTGATGGA AGATGGGAGT GGCCTGATTG
  TACTTGACAC CCCGAATGAT GGCACAGTTG ATAACCACCT ACAAGAGAGA ACAGGTTGAC
  D
  CGGGCTCCGT GGTAGGGAGG CAGAGGGACA GAGGGACAGA GGGACAGAGG GAGCCTGCAC
  CTGCTGATCC GGCTGCATCT TGCGGCCAAC AACTCGGAAG GAGTTAGCAG TGGGGTTGTG
  GTAGATCTGG ACGCGGCTGA AGGCCTGGGG ACCAGTGCCA GCAGGGAGCC ATCGCTTGTT
  GCTGTCATCA TAAAGCATCA                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370745481	MGP_WTSI_7_19849942	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G	G	T	A	G	A	G	G	G	G	A	G	G	G	A	G	A	A	G	A	G	A	G	A	G	G	A	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228369376					SNP	A	A	A	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G	G	T	A	G	A	G	G	G	G	A	G	G	G	A	G	A	A	G	A	G	A	G	A	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370745481	MGP_WTSI_7_19849942	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18998518 () rs orientation: forward

Symbol	Name	Function Class
Rr167144	regulatory region 167144	282 bp proximal
Rr167145	regulatory region 167145	1482 bp proximal
Tssr64812	transcription start site region 64812	1703 bp upstream
Tssr70883	transcription start site region 70883	110 bp upstream
Tssr70884	transcription start site region 70884	217 bp downstream
Tssr70885	transcription start site region 70885	1396 bp downstream
Tssr70886	transcription start site region 70886	1949 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates