rs228369596 SNP Detail

Summary

• ID
  rs228369596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56703874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTTTGG GTTCTCGCCC
  TCCTGGGGAG CTCATCAAGG TTCCCCGCTG CCACAACGAC CTCTCCGCGA GACCCTTCCT
  GGGCCGACCG CGCCTCACGT TCCCCGCTGC TCCCAGAGGA CACCCGGCGG GCGTTCCCGC
  TCCTCCGCTG TGCCCTGCCC CGTCGTGGCC GCGCTAACAA CCCCAGCCCC GGGCCCAGCT
  R
  CCCCACTCCT GCGGCTTCCC CCGCACTCCC GCCCACAGCC GTGTGCTCTT GATTCTTTCG
  GTCGCTGCTC TTGTCTTCCA CCTGTCCCCG ACCAGTCTCC GGCCTCTCCC GCTGCCTTTC
  CTTCTGCCTT GCCGCCGCCC TTTTCCGCGC CCACCTCCCC ACTGCCCTGC ACTGCCTCTC
  ACATTTTCCG CATCACACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss377676500	MGP_WTSI_9_56644397	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs228369596					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377676500	MGP_WTSI_9_56644397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56703874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	within coordinates
Gm31586	predicted gene, 31586	402 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1	mRNA-UTR
Rr679503	regulatory region 679503	463 bp distal
Rr679504	regulatory region 679504	322 bp distal
Rr679505	regulatory region 679505	within coordinates
Rr679506	regulatory region 679506	520 bp proximal
Rr679507	regulatory region 679507	1217 bp proximal
Tssr89733	transcription start site region 89733	766 bp upstream
Tssr89734	transcription start site region 89734	347 bp upstream
Tssr89735	transcription start site region 89735	271 bp upstream
Tssr89736	transcription start site region 89736	282 bp downstream