rs228380543 SNP Detail

Summary

• ID
  rs228380543
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85390165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGAAAT AGGCAGCCAC
  CTGACCAATA TTTACTAAAC GAATGATTAT ATGATTATAC TATGGCGAAA GGATCAACTA
  AAGCCTGCAG CCCTTCTATC TCCACCTTTC TGGACATGGG TGGAAAGTGG GCACGGACAC
  TGTACCCCGT AACCACAGAT ATCCACCACC TCACGACTGC TCTTTACTTT CAGCGTTAAA
  S
  ATCTCCCAGT TTTCCGCAAC CCAGTGGCAT GGAAGTCCCA ATGTCCATAG GGCCTGCGAT
  CTTCCCTTGT CAATAGAGCA GTTTTCTGCC TTCATGCCCT CGTGAACGGA ATTACTCCAA
  GAAAGACAGA TATCTGGGTC GAGATGGCAC AGTGGGTGGA GCCACTTGTT GCCAAGCCTA
  ACGAACTCAG TTCGATTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375403962	MGP_WTSI_8_87187435	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228380543					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375403962	MGP_WTSI_8_87187435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85390165 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	within coordinates
Cpgi20702	CpG island 20702	363 bp distal
Cpgi20703	CpG island 20703	499 bp proximal
Cpgi20704	CpG island 20704	1311 bp proximal
Gm26664	predicted gene, 26664	554 bp upstream
Gm50464	predicted gene, 50464	1705 bp upstream
Ier2	immediate early response 2	684 bp upstream
Rr368564	regulatory region 368564	948 bp downstream
Rr368565	regulatory region 368565	363 bp upstream
Rr368566	regulatory region 368566	1317 bp upstream
Rr401023	regulatory region 401023	479 bp downstream
Rr666565	regulatory region 666565	192 bp distal
Rr666566	regulatory region 666566	202 bp proximal
Rr666567	regulatory region 666567	1073 bp proximal
Rr666568	regulatory region 666568	1609 bp proximal
Tssr2627	transcription start site region 2627	1562 bp upstream
Tssr78424	transcription start site region 78424	530 bp downstream
Tssr78425	transcription start site region 78425	675 bp upstream
Tssr78426	transcription start site region 78426	707 bp upstream
Tssr78427	transcription start site region 78427	1002 bp upstream
Tssr82105	transcription start site region 82105	1981 bp upstream
Tssr82106	transcription start site region 82106	1931 bp upstream
Tssr82107	transcription start site region 82107	677 bp upstream
Tssr82108	transcription start site region 82108	521 bp upstream
Tssr82109	transcription start site region 82109	465 bp upstream
Tssr82110	transcription start site region 82110	385 bp downstream