rs228386404 SNP Detail

Summary

• ID
  rs228386404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59955253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGGGA AGAGGAGCCA
  GCCCCCACCC CGCGGGGCCG GCTCCGAGTC CCGGCACACT TCCTAGCCTT TCCCGATCCC
  AATTCTGGGG TTCGCGGAAC TACTTTAGGG GAGGGGAGCG GGGCGTCGCG GGGGAGGGAG
  GACGCGGAGC CCGAGGACCC GGAGCCCAGC CCGCCAGGCC GCCGCGGCCC CAGGACGCCC
  R
  GAGCCCTCCC GGAGCCGAGC CGCCCGGTAC CCGCCGCCCG GGGCCGCGGC CCCACCCCCA
  CCCGGCTCCG GAGCCCCAGC GGCCTGGCGC GGTTCGGCGG GAGCGAGGCT GCGGGCCCCG
  GGCGGAGGCG GGGGCGGCCA GGGCCCGGCG CCTCGGGAGC TGCCCCGCGG GGCGCCGCAG
  CGGGCCGGGC TGGAGGACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354152681	MGP_WTSI_2_59962966	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs228386404					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354152681	MGP_WTSI_2_59962966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59955253 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	within coordinates
Gm13620	predicted gene 13620	187 bp upstream
Rr396985	regulatory region 396985	1071 bp downstream
Rr396986	regulatory region 396986	530 bp downstream
Rr557596	regulatory region 557596	732 bp distal
Rr557597	regulatory region 557597	within coordinates
Rr557598	regulatory region 557598	198 bp proximal
Rr557599	regulatory region 557599	778 bp proximal
Tssr24181	transcription start site region 24181	677 bp downstream
Tssr24182	transcription start site region 24182	698 bp downstream
Tssr24183	transcription start site region 24183	742 bp downstream
Tssr24184	transcription start site region 24184	903 bp downstream