rs228396785 SNP Detail

Summary

• ID
  rs228396785
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTGTAA TGGACTGACT
  CATTCCAGTG TGGGCTGGGT GCCTCCTGTT CCTGCAAAGT CATGGACAAA CCCAGGTAGG
  AGAAGAGGCT GCCCTGCATC TTGTCCCTGC AGCATCTCAG CTGGAAGTGG AAGGAGAGGT
  AGGGAACGTT AGCCTGTCTC TAGGCAGACT GAGGTCTCTG AAAGGCAGGC CATCAGCTCC
  S
  TAATTCCCCC TTTCATGTTC CCATCTCAGT AATAGCTGGA GACAAGGTGC AAGAGGTAGA
  AAGTTTGGCT GAACCCTTGT CCCCTTGCCC TGGCCATAAC TTGGGTGCTC CAATGCCATG
  TCCTCTACCC CAAAAGGATC CCCAAAATAG CAGTCTCATG TCTCCCCTCA AAATAGCCCT
  GAGACAAGTC CTTCTTAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408107	CHEV_17_48486597	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228396785					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654300 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1100 bp distal
Rr335234	regulatory region 335234	299 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	855 bp downstream
Tssr145094	transcription start site region 145094	827 bp downstream
Tssr145095	transcription start site region 145095	779 bp downstream
Tssr145096	transcription start site region 145096	746 bp downstream
Tssr145097	transcription start site region 145097	229 bp upstream
Tssr145098	transcription start site region 145098	556 bp upstream
Tssr145099	transcription start site region 145099	1208 bp upstream
Tssr145100	transcription start site region 145100	1237 bp upstream
Tssr145101	transcription start site region 145101	1274 bp upstream
Tssr145102	transcription start site region 145102	1373 bp upstream
Tssr148525	transcription start site region 148525	1418 bp downstream