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rs228402407 SNP Detail
Summary
  • ID
    rs228402407
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:8060296 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAAGTAGAG TTTAATAATG
GTATGACTGT CAAAGTAAAC AATCAGCTCA CCCTTGACAG TCACACAAAG TACTTCCACA
AGTTGAGTGT TCCTAGGCTG GACTTCTCCA GTAAGGCTTC TCTTAATAAT GAAATCAAGA
CACTATTAGA AGCTGGACAT GTGGCATTGA CATCTTCAGG GACAGGGTCA TGGAACTGGG
Y
CTGTCCCAAC TTCTCGGATG AAGGCATACA TTCGTCCCAA ATTAGCTTTA CTGTGGATGG
TCCCATTGCT TTTGTTGGAC TATCCAATAA CATAAATGGC AAACACTTAC GGGTCATCCA
AAAACTGACT TATGAATCTG GCTTCCTCAA CTATTCTAAG TTTGAAGTTG AGTCAAAAGT
TGAATCTCAG CACGTGGGCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064704 MGP_WTSI_12_8017102 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228402407 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064704 MGP_WTSI_12_8017102 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8060296 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr3782 transcription start site region 3782 1584 bp downstream
Tssr112645 transcription start site region 112645 1904 bp downstream
Tssr112646 transcription start site region 112646 1875 bp downstream
Tssr112647 transcription start site region 112647 1703 bp downstream
Tssr112648 transcription start site region 112648 1681 bp downstream
Tssr112649 transcription start site region 112649 1199 bp downstream
Tssr112650 transcription start site region 112650 1119 bp downstream
Tssr112651 transcription start site region 112651 1067 bp downstream
Tssr112652 transcription start site region 112652 1037 bp downstream
Tssr112653 transcription start site region 112653 1018 bp downstream
Tssr112654 transcription start site region 112654 1004 bp downstream
Tssr112655 transcription start site region 112655 981 bp downstream
Tssr112656 transcription start site region 112656 961 bp downstream
Tssr112657 transcription start site region 112657 947 bp downstream
Tssr112658 transcription start site region 112658 914 bp downstream
Tssr112659 transcription start site region 112659 835 bp downstream
Tssr112660 transcription start site region 112660 711 bp downstream
Tssr112661 transcription start site region 112661 476 bp downstream
Tssr112662 transcription start site region 112662 235 bp downstream
Tssr112663 transcription start site region 112663 within coordinates
Tssr112664 transcription start site region 112664 15 bp upstream
Tssr112665 transcription start site region 112665 180 bp upstream
Tssr112666 transcription start site region 112666 189 bp upstream
Tssr112667 transcription start site region 112667 236 bp upstream
Tssr112668 transcription start site region 112668 374 bp upstream
Tssr112669 transcription start site region 112669 459 bp upstream
Tssr112670 transcription start site region 112670 512 bp upstream
Tssr112671 transcription start site region 112671 627 bp upstream
Tssr112672 transcription start site region 112672 1206 bp upstream
Tssr112673 transcription start site region 112673 1249 bp upstream
Tssr112674 transcription start site region 112674 1350 bp upstream
Tssr112675 transcription start site region 112675 1377 bp upstream
Tssr112676 transcription start site region 112676 1480 bp upstream
Tssr112677 transcription start site region 112677 1630 bp upstream
Tssr112678 transcription start site region 112678 1754 bp upstream
Tssr112679 transcription start site region 112679 1779 bp upstream
Tssr112680 transcription start site region 112680 1798 bp upstream
Tssr112681 transcription start site region 112681 1845 bp upstream
Tssr112682 transcription start site region 112682 1858 bp upstream
Tssr112683 transcription start site region 112683 1895 bp upstream
Tssr112684 transcription start site region 112684 1939 bp upstream
Tssr112685 transcription start site region 112685 1987 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory