rs228410087 SNP Detail

Summary

• ID
  rs228410087
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGAAGGT GAAAGATGTG
  TATGTGATAA CAGGTGCGTG GCGTGAACTC CACAGCAGCG GAGGAGGACG GGGCATTTAG
  CAGATTAGGA AAGAACCAGC ACCCAGTGTT CTGGGTTAGG GTGAGGCTCA TCTGGACTCC
  AGCAGAGCTT AGCTATTTAC TTCTGTGCTG TGCTGGCCCA CGTGTTGGCA GCTGGGAGAC
  K
  CTAAGGCTTA CCTATGAGGA GGTCTAGTTT TAGTCTTCAG GCAGAGGGCG TCTCTGCAGC
  ACTCCCTCAC AGGCGAGCCA CCTATTTTCT TTTCTTCTTG TGTTGTATCT TCTAGATCAG
  ATCCCTGTAT TCGTGACCAT GTCCCAGAAG AATGACAGGA ACTTGTCTGA TGAGATCTTC
  CTCAGAGACC TCCCCATCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235222	MGP_WTSI_6_48997619	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228410087					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235222	MGP_WTSI_6_48997619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024554 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1170 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1182 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56326	transcription start site region 56326	1994 bp downstream
Tssr56327	transcription start site region 56327	1940 bp downstream
Tssr56328	transcription start site region 56328	1862 bp downstream
Tssr56329	transcription start site region 56329	1786 bp downstream
Tssr56330	transcription start site region 56330	1615 bp downstream
Tssr56331	transcription start site region 56331	1570 bp downstream
Tssr56332	transcription start site region 56332	1497 bp downstream
Tssr56333	transcription start site region 56333	1459 bp downstream
Tssr56334	transcription start site region 56334	1449 bp downstream
Tssr56335	transcription start site region 56335	1429 bp downstream
Tssr56336	transcription start site region 56336	1402 bp downstream
Tssr56337	transcription start site region 56337	1379 bp downstream
Tssr56338	transcription start site region 56338	1363 bp downstream
Tssr56339	transcription start site region 56339	1349 bp downstream
Tssr56340	transcription start site region 56340	1159 bp downstream
Tssr56341	transcription start site region 56341	899 bp downstream
Tssr56342	transcription start site region 56342	867 bp downstream
Tssr56343	transcription start site region 56343	321 bp downstream
Tssr56344	transcription start site region 56344	297 bp downstream
Tssr56345	transcription start site region 56345	278 bp downstream
Tssr56346	transcription start site region 56346	225 bp downstream
Tssr56347	transcription start site region 56347	207 bp downstream
Tssr56348	transcription start site region 56348	184 bp downstream
Tssr56349	transcription start site region 56349	128 bp upstream
Tssr56350	transcription start site region 56350	155 bp upstream
Tssr56351	transcription start site region 56351	185 bp upstream
Tssr56352	transcription start site region 56352	198 bp upstream
Tssr56353	transcription start site region 56353	267 bp upstream
Tssr56354	transcription start site region 56354	282 bp upstream
Tssr56355	transcription start site region 56355	307 bp upstream
Tssr56356	transcription start site region 56356	325 bp upstream
Tssr56357	transcription start site region 56357	337 bp upstream
Tssr56358	transcription start site region 56358	355 bp upstream
Tssr56359	transcription start site region 56359	370 bp upstream
Tssr56360	transcription start site region 56360	407 bp upstream
Tssr60848	transcription start site region 60848	1212 bp upstream
Tssr60849	transcription start site region 60849	258 bp upstream
Tssr60850	transcription start site region 60850	205 bp upstream
Tssr60851	transcription start site region 60851	234 bp downstream
Tssr60852	transcription start site region 60852	277 bp downstream
Tssr60853	transcription start site region 60853	287 bp downstream
Tssr60854	transcription start site region 60854	306 bp downstream
Tssr60855	transcription start site region 60855	339 bp downstream
Tssr60856	transcription start site region 60856	377 bp downstream
Tssr60857	transcription start site region 60857	406 bp downstream