rs228411179 SNP Detail

Summary

• ID
  rs228411179
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30353243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAAAAC ACTGGTGGGG
  CTGCAGAATC AGCAGTGGGG GCCAAGTGAG TCTCAGTCAG ACAGAAGTGA TTGAGGATTC
  AGCCACTCAG AGGTCACTGG TGACCTGACC AAGGAATCTT AGAATAGTGG GAGAAGGAGG
  TGAACTTTTT GTCATCTCTT TCTCAACCCT CTTTCCCTTG AGGACCCAGA AGGTAAGCCA
  K
  AGCTCCGAGG TCCCTTCCCC ACTCTACCTA CAATCCTTTG CTTCCCTGTC TGCCTCAGCC
  TCAGCCCAAA GTCTTGCCAC CTCTTTTCAA GACCGACCAG CTTCTAGTGA CGTCTCCCTG
  CCTATCTGCT GCCTAGTGAT GCTTCAAACA TGCACAGGTG ACCTTGAGCT TAGCTCCGAA
  GCCTTCCCAG AGGTCACTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325130492	CHEV_16_30534511	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228411179					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30353243 () rs orientation: forward

Symbol	Name	Function Class
Gm60148	predicted gene, 60148	981 bp downstream
Rr514267	regulatory region 514267	705 bp proximal
Rr514268	regulatory region 514268	1249 bp proximal
Tmem44	transmembrane protein 44	within coordinates
Tssr137879	transcription start site region 137879	1641 bp upstream