rs228411796 SNP Detail

Summary

• ID
  rs228411796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:39008954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCAGAAG AAAAGTGCCA
  AACTTGCTTC TGCCCCTCTA ACAATGTTTT TTTCCCATCT TCACACAACT GGAAGAGCAA
  CTAATGTTGA ACATCAGTTT GCCTCCAGGC TGTTTCAGAG TGACATTTGG AGGCAAGAAA
  GAAAATTGTG TTGTGCTAAC TCTGTTGGGC TCTGAAGATT GATTGTTTTC TGTTCTGTAT
  Y
  AAAACTCCCA AGGTCAAGAC CCAAAATTTT CTCCTTTATA CTTGAACCTA ACAAAAGAAT
  TACCCATCTT AAAAAAAAAT GATGGAAAAA CAAACAAACA AACCCATCTA ACAGTCAACT
  TGAAAAAAAA GTTAATATCA CTATGTTCTC TAGTGAGAGT TTTAAGGAAA ATGGTTTCTG
  TTTTCCTTGA AAACAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322911107	CHEV_9_38905243	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228411796					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:39008954 () rs orientation: forward

Symbol	Name	Function Class
Gm47085	predicted gene, 47085	43 bp downstream