rs228414811 SNP Detail

Summary

• ID
  rs228414811
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45112089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGCTTGC CTAGAGCGCA
  CAAGGCCTGG GGTCTGTCTA TCCCATTAGC TCCTACACTG ACATGTGGAA GCAGGAGCTC
  AAATGGTCAA GGGCATCTTC AGCTACAGAG TGAGTCTGAA GACAGCCTGA GATACAGGAG
  GCCATCTCAC GATGTAAATA AATAAACGAG AAACACAACA AGATGGTCGT CAAAGGATCA
  M
  CCAGTGCATG TGAGAGATTC CAGAAAGGAA GGGAGCAATC AAGTCAGGCC ATGGAAGTCA
  GTGGGTACCA GAGGCACTAA GATAGTAGAT CTAAGGATAC CTAGCTTAGA TCATTGTCTG
  AATGCCCGGG GGCACCTCTG TGCTGACCCT TAGATCTGAA AAAGTGGCTC TCAACCTTTT
  AGTTCATGAT CCCAGAGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177680	MGP_WTSI_7_52718035	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228414811					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177680	MGP_WTSI_7_52718035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45112089 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm73429	predicted gene, 73429	1202 bp upstream
Gm73431	predicted gene, 73431	1015 bp downstream
Rr380754	regulatory region 380754	1233 bp downstream
Rr646452	regulatory region 646452	1646 bp distal
Rr646453	regulatory region 646453	1213 bp distal
Rr646454	regulatory region 646454	716 bp distal
Rr646455	regulatory region 646455	374 bp proximal
Tssr66542	transcription start site region 66542	1565 bp downstream
Tssr72399	transcription start site region 72399	1719 bp upstream
Tssr72400	transcription start site region 72400	1688 bp upstream