rs228415912 SNP Detail

Summary

• ID
  rs228415912
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTACTTA GATAGGGTCT AGGGAGCTGG GAGTTGGTTC
  AGTGCAACTT GTGGATCTGA GTTCAAATCT TAGCACTGGG TATGGCTGGC TGCATTGTGC
  M
  CGTAACCCCA GCATTGGAGG GCAGAGACCA GCAGATCCCA AGAGGTAACC ATCTAGTCTA
  GCAAAAATGG TTCTAGATCA GTGAAAAGGC CCTGCCTCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585273	CHEV_2_157105972	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228415912					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mroh8	maestro heat-like repeat family member 8			687 bp upstream
Rpn2	ribophorin II			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Rr397441	regulatory region 397441			1187 bp downstream
Rr568459	regulatory region 568459			1080 bp distal
Rr568460	regulatory region 568460			288 bp distal
Tssr21228	transcription start site region 21228			1211 bp downstream
Tssr21229	transcription start site region 21229			1172 bp downstream
Tssr21230	transcription start site region 21230			1106 bp downstream
Tssr21231	transcription start site region 21231			919 bp downstream
Tssr27165	transcription start site region 27165			718 bp upstream
Tssr27166	transcription start site region 27166			681 bp upstream
Tssr27167	transcription start site region 27167			658 bp upstream