rs228416383 SNP Detail

Summary

• ID
  rs228416383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100575210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACATCTTT TTTTTTTTAA
  TTGAACTTAA AAAGAAGAGG AGTTTGAGGT GACAGCTCAG TTTAAAGCAA GCACAGAGGC
  CTGAAATTGA TCCTCAGAAC CCAGATTTTA AAGTAAAAAT TCCTGGATAG TATTGTTCCC
  TTGTAGGCTC AGTGTTGGGA GGCAGAGACA GGCAGATCCT GGATCCTAGC TTCTTCTGTG
  R
  CTTACAGGAC GGTAAGAGAC CTTGGCTCAA GAATAAAGGT TGACAACACC CGAAGAATGA
  CATTAGAAGT TGGTCTATGG TGGCGTGCAC ATTTAGTCCC AGCACTCAGG AGGCAGAGGC
  AGGCCGATCT CTATGCATTG GAGGCCAGCC CGCTATACAG AGTGAGTTCC AGGATAGCCA
  GGGCTGTATG GCGAGACCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395181595	MGP_WTSI_15_100507760	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228416383					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395181595	MGP_WTSI_15_100507760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100575210 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509796	regulatory region 509796	366 bp distal
Rr509797	regulatory region 509797	1313 bp proximal
Rr509798	regulatory region 509798	1523 bp proximal
Tssr4721	transcription start site region 4721	1755 bp upstream
Tssr136468	transcription start site region 136468	1967 bp upstream
Tssr136469	transcription start site region 136469	1927 bp upstream
Tssr136470	transcription start site region 136470	1915 bp upstream
Tssr136471	transcription start site region 136471	1893 bp upstream
Tssr136472	transcription start site region 136472	1882 bp upstream
Tssr136473	transcription start site region 136473	755 bp downstream
Tssr136474	transcription start site region 136474	785 bp downstream
Tssr136475	transcription start site region 136475	844 bp downstream
Tssr136476	transcription start site region 136476	1506 bp downstream