rs228423643 SNP Detail

Summary

• ID
  rs228423643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8058664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAATAC TTTGTTATGA
  ATCTTATTGA AGATTTTAAA GTAACTGAGA AAATCAATAC TTTTAGAGTT ATAGTCCGTG
  AGCTAATTGA GAAATATGAA GTAGACCAAC ACATCCAGGT TTTAATGGAT AAATCAGTAG
  AGTTGGCCCA CAGATATAGC CTGAGCGAGC CTCTTCAGAA ACTCAGTAAT GTGCTACAGC
  R
  AATTGAGATA AAAGATTACT ATGAGAAATT GGTTGGGTTT ATTGATGATA CTGTTGAGTG
  GCTTAAAGCA TTGTCTTTCA AAAATACCAT TGAAGAACTA AATAGATTGA CTGACATGTT
  GGTGAAGAAG TTGAAAGCAT TTGATTATCA CCAGTTTGTA GACAAAACCA ACAGCAAAAT
  CCGTGAGATG ACTCAGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064687	MGP_WTSI_12_8015470	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228423643					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064687	MGP_WTSI_12_8015470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8058664 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	32 bp upstream
Tssr112633	transcription start site region 112633	1928 bp downstream
Tssr112634	transcription start site region 112634	1783 bp downstream
Tssr112635	transcription start site region 112635	1697 bp downstream
Tssr112636	transcription start site region 112636	1232 bp downstream
Tssr112637	transcription start site region 112637	1152 bp downstream
Tssr112638	transcription start site region 112638	1087 bp downstream
Tssr112639	transcription start site region 112639	845 bp downstream
Tssr112640	transcription start site region 112640	803 bp downstream
Tssr112641	transcription start site region 112641	751 bp downstream
Tssr112642	transcription start site region 112642	677 bp downstream
Tssr112643	transcription start site region 112643	588 bp downstream
Tssr112644	transcription start site region 112644	374 bp downstream
Tssr112645	transcription start site region 112645	272 bp downstream
Tssr112646	transcription start site region 112646	243 bp downstream
Tssr112647	transcription start site region 112647	71 bp downstream
Tssr112648	transcription start site region 112648	49 bp downstream
Tssr112649	transcription start site region 112649	422 bp upstream
Tssr112650	transcription start site region 112650	481 bp upstream
Tssr112651	transcription start site region 112651	552 bp upstream
Tssr112652	transcription start site region 112652	576 bp upstream
Tssr112653	transcription start site region 112653	603 bp upstream
Tssr112654	transcription start site region 112654	619 bp upstream
Tssr112655	transcription start site region 112655	637 bp upstream
Tssr112656	transcription start site region 112656	659 bp upstream
Tssr112657	transcription start site region 112657	674 bp upstream
Tssr112658	transcription start site region 112658	707 bp upstream
Tssr112659	transcription start site region 112659	760 bp upstream
Tssr112660	transcription start site region 112660	912 bp upstream
Tssr112661	transcription start site region 112661	1143 bp upstream
Tssr112662	transcription start site region 112662	1387 bp upstream
Tssr112663	transcription start site region 112663	1622 bp upstream
Tssr112664	transcription start site region 112664	1647 bp upstream
Tssr112665	transcription start site region 112665	1812 bp upstream
Tssr112666	transcription start site region 112666	1821 bp upstream
Tssr112667	transcription start site region 112667	1868 bp upstream