rs228425894 SNP Detail

Summary

• ID
  rs228425894
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132238843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTACCC TTGATTCACC
  CATTCACTTC TACTCATCTC CTTCGCGGTT TTTCTTCAGG CCTCTCCCGT TTCAAGTTTC
  TCTTTATTCT GGTTAAGGAG TCCTAGACAG AGCTGGAGCT GATTAATCCT CTCAGTTCCT
  GCCTGAAATA GTCTTGAGTT TAGGCTTATG ATACCAAAGG TGATCTCCTG ACTTGGTCTA
  M
  TGCCTTCTGT AGGGAAGGGA GTTCACCTGC ATGCTCCTTA GAGCCCTAAA CTCGGGCTGG
  ACCTTTCTCT CTGTGTTTTA ATACTTTCCA TACTGTAACT TGTGTTGTCA TATTCTGTGT
  ATTTGTCTTA TCTGAAAGTT TTTATTATAA ACTTGTTGAG GGCAGTGTCT ACATTTAGAC
  TTTTTTTTTT TCTTTCTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363295663	MGP_WTSI_4_132067447	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228425894					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363295663	MGP_WTSI_4_132067447	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132238843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	757 bp distal
Gm12981	predicted gene 12981	1883 bp upstream
Gm68741	predicted gene, 68741	1429 bp downstream
Rr377206	regulatory region 377206	463 bp downstream
Rr377207	regulatory region 377207	1537 bp upstream
Rr600990	regulatory region 600990	1894 bp distal
Rr600991	regulatory region 600991	1393 bp distal
Rr600992	regulatory region 600992	541 bp distal
Rr600993	regulatory region 600993	598 bp proximal
Rr600994	regulatory region 600994	1502 bp proximal
Rr600995	regulatory region 600995	1672 bp proximal
Sesn2	sestrin 2	1076 bp upstream
Tssr43678	transcription start site region 43678	1055 bp upstream
Tssr43679	transcription start site region 43679	1041 bp upstream
Tssr43680	transcription start site region 43680	1023 bp upstream