rs228434883 SNP Detail

Summary

• ID
  rs228434883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3688502 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AAGGATACAT AGGCCTTTTA
  TTTCACTGTA TTGTTAGAAC AGTTAATTGA ATATATATAT ATATATATAT ATATTGTTTT
  TCGAAACAGG GTTTCTCTGT GTATCCCTGG CTATCCTGGA GCTCACTCTG TAGAACAGGC
  TGAACTTGAA CTCAGAAATC CTCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCATG
  R
  GCCACCACTG CCCAGCTAAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
  ATAACAATTA ATCTTATTAA TGGCCCTCAC TATTTTCTTA ATATACTTAC TTTATAAATC
  ATCCTCTCTC ATCGGTAGGT AAGTATGAAT GGCAAATGTT ATATTGTGTA TGGTTGACTT
  CAGGTACTGA CTTGGAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	DBA/1J	I/LnJ	KK/HlJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss379331507	MGP_WTSI_10_6608039	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	DBA/1J	I/LnJ	KK/HlJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs228434883					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379331507	MGP_WTSI_10_6608039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3688502 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	1714 bp proximal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	1862 bp upstream
Rr222570	regulatory region 222570	1163 bp distal
Rr224667	regulatory region 224667	1298 bp proximal
Tssr92214	transcription start site region 92214	1751 bp upstream
Tssr92215	transcription start site region 92215	1846 bp upstream
Tssr92216	transcription start site region 92216	1951 bp upstream