rs228438890 SNP Detail

Summary

• ID
  rs228438890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126186723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCACGGA GCTGGAGGAG
  ACTACAGAGA AGCAAAGTGG ACAGGAAGTT GGCTTGGTGG GCTCAGCAGA GAAGGTGTCT
  GGCTATGATA TCCAAGAAAT TGATGGGACT GAAGAGGGGG AGCAGGCAGA GATGGAGACA
  TCTGTAATGG CAGAAGACAT AAGGGGGACG GATGGTGTGA CTTTAGGCTC CCAGGCAGAG
  R
  GAGCAGAGGG GTCCATAACC CCCATGGAGA CTGAGGGGCT CCTAAGAGAT CAGATGCTGT
  TGGAAGAAGA GGCTGGGGGA GGGCAGTCGC GAGAGCAGAA GGTCCACAAC TCAGAGGGCG
  AGATCCAAAC GCTGGACGAC TCTTCAGACC AGGAGGGGCA GCAGACACAC CAAATCCCCA
  CAGTAGCTGT GCCTGGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373071344	MGP_WTSI_7_133731065	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228438890					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373071344	MGP_WTSI_7_133731065	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126186723 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Cln3	CLN3 lysosomal/endosomal transmembrane protein, battenin	1732 bp upstream
Il27	interleukin 27	1459 bp downstream
Tssr69036	transcription start site region 69036	1930 bp downstream
Tssr69037	transcription start site region 69037	1664 bp downstream
Tssr69038	transcription start site region 69038	1627 bp downstream
Tssr69039	transcription start site region 69039	1608 bp downstream
Tssr69040	transcription start site region 69040	1383 bp downstream
Tssr69041	transcription start site region 69041	1844 bp upstream
Tssr74767	transcription start site region 74767	1960 bp upstream
Tssr74768	transcription start site region 74768	1711 bp upstream
Tssr74769	transcription start site region 74769	14 bp upstream
Tssr74770	transcription start site region 74770	8 bp downstream
Tssr74771	transcription start site region 74771	1614 bp downstream
Tssr74772	transcription start site region 74772	1687 bp downstream
Tssr74773	transcription start site region 74773	1705 bp downstream
Tssr74774	transcription start site region 74774	1748 bp downstream
Tssr74775	transcription start site region 74775	1850 bp downstream
Tssr74776	transcription start site region 74776	1857 bp downstream
Tssr74777	transcription start site region 74777	1896 bp downstream