rs228448744 SNP Detail

Summary

• ID
  rs228448744
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96183188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCGGA AGGCCCTCCG
  CGGTCCCCGC GGGCGAGCGC GCACGACGAC GGCGGCGGGC CCTCCCGGTC CTCGTCCCTC
  CGGATCCGGG GCCCGCGGTC ACCCCGCCGC GAGTCCAGTC CAGCCCACCC CGCCTCTGCC
  TTCAGCTACC CTTCCCGTGG CGCGCGGCCT CGCTCGGAGA AGACGGAAGA GGACAGGGCG
  M
  GCCGGGCCAG GAGTCGCCGA CGTCCTTGGC AACGCGGTCC TTCCCCCCCC CCCACACCCC
  ACGCGGGCTT CCCCCCCGGG TCCGCTGCAT CCTCGGCGGA GGTATTCCAC GGTGACGGGT
  CTCTCGCCTC GCGCACAAGA TGGGGCCCGG GGAGCGGCCG CCCGGCGGAT CCATGGGCGC
  CGCCATTTTG TGAGGCGCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395085932	MGP_WTSI_15_96115738	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228448744					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085932	MGP_WTSI_15_96115738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96183188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7599	CpG island 7599	within coordinates
Cpgi7600	CpG island 7600	982 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	within coordinates
Rr369997	regulatory region 369997	934 bp downstream
Rr391146	regulatory region 391146	within coordinates
Rr508521	regulatory region 508521	1733 bp distal
Rr508522	regulatory region 508522	1209 bp distal
Rr508523	regulatory region 508523	322 bp distal
Rr508524	regulatory region 508524	270 bp proximal
Rr508525	regulatory region 508525	388 bp proximal
Rr508526	regulatory region 508526	1378 bp proximal
Rr508527	regulatory region 508527	1627 bp proximal
Rr508528	regulatory region 508528	1721 bp proximal
Tssr132814	transcription start site region 132814	698 bp upstream
Tssr132815	transcription start site region 132815	1449 bp upstream
Tssr132816	transcription start site region 132816	1482 bp upstream
Tssr132817	transcription start site region 132817	1553 bp upstream
Tssr132818	transcription start site region 132818	1623 bp upstream
Tssr132819	transcription start site region 132819	1941 bp upstream
Tssr132820	transcription start site region 132820	1963 bp upstream
Tssr136021	transcription start site region 136021	184 bp downstream
Tssr136022	transcription start site region 136022	402 bp downstream
Tssr136023	transcription start site region 136023	578 bp downstream