rs228450564 SNP Detail

Summary

• ID
  rs228450564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69578617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAGTC AGATCTCATT
  ACAGGTAGTT GTGAGCCACC ATGTGGTTGG TGGGATTTGA ACTCAGAACC TTCAAAAGAG
  CAGTTGGTAC TCTTACCTGC TGAGCCATCT TGCCAGCCCC CAGAATTTTC AATACAGAGC
  TTTCTTATAT CTTCCATGTT TTGCCTCATC TTTGCTTAGG TAACTTAACA TAAACATTCT
  K
  TTATTTTTAG CTTTATTTTA CATGATCGCA CTCCTATACT AAGCTGTCTC TGTGATTCTT
  TTACCACCAT TTCTCCTTCT GTAATCATTC TGTTGTAGTT TAATGTATGT GATTATATAT
  CCATTCTTTT TTTCCTGTAA CTTTGTAGAA TGTTACGTTC TAAGAGATCA AAATCTGCTA
  TATCTTGGCT TATTGGTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377435	MGP_WTSI_2_69586330	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228450564					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377435	MGP_WTSI_2_69586330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69578617 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	677 bp upstream
Tssr18140	transcription start site region 18140	715 bp upstream
Tssr18141	transcription start site region 18141	730 bp upstream
Tssr18142	transcription start site region 18142	753 bp upstream
Tssr18143	transcription start site region 18143	785 bp upstream
Tssr18144	transcription start site region 18144	989 bp upstream
Tssr18145	transcription start site region 18145	1105 bp upstream
Tssr18146	transcription start site region 18146	1206 bp upstream
Tssr18147	transcription start site region 18147	1255 bp upstream
Tssr18148	transcription start site region 18148	1294 bp upstream
Tssr18149	transcription start site region 18149	1318 bp upstream
Tssr18150	transcription start site region 18150	1364 bp upstream
Tssr18151	transcription start site region 18151	1379 bp upstream
Tssr18152	transcription start site region 18152	1455 bp upstream
Tssr18153	transcription start site region 18153	1540 bp upstream
Tssr18154	transcription start site region 18154	1644 bp upstream
Tssr18155	transcription start site region 18155	1665 bp upstream
Tssr18156	transcription start site region 18156	1707 bp upstream