rs228457856 SNP Detail

Summary

• ID
  rs228457856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84491812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAT GAAATACTTA TCTGGTTGAG
  R
  AAGATTTAAG GCAAGTTCGG GCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss923740108	MGP_WTSI_17_84184384	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs228457856					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923740108	MGP_WTSI_17_84184384	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84491812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1214 bp proximal
Gm41640	predicted gene, 41640	1453 bp upstream
Gm64687	predicted gene, 64687	1413 bp downstream
Rr1582	regulatory region 1582	584 bp downstream
Rr532021	regulatory region 532021	1994 bp distal
Rr532023	regulatory region 532023	996 bp distal
Rr532024	regulatory region 532024	1374 bp distal
Rr532025	regulatory region 532025	229 bp distal
Rr532026	regulatory region 532026	881 bp proximal
Tssr146043	transcription start site region 146043	612 bp downstream
Tssr146044	transcription start site region 146044	1362 bp upstream
Tssr149649	transcription start site region 149649	792 bp upstream
Tssr149650	transcription start site region 149650	1180 bp downstream
Tssr149651	transcription start site region 149651	1218 bp downstream
Tssr149652	transcription start site region 149652	1603 bp downstream
Tssr149653	transcription start site region 149653	1651 bp downstream
Tssr149654	transcription start site region 149654	1791 bp downstream
Tssr149655	transcription start site region 149655	1887 bp downstream
Tssr149656	transcription start site region 149656	1977 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates