rs228464877 SNP Detail

Summary

• ID
  rs228464877
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63237791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTAGTCTC CCTAGCACTG
  CAATTATAGG CGTGAATGCC ATATACAGAC CCAGGAACGG TGTGATTTAC AATACATTCT
  TTCTCTTGCC TTTTTTTTTT TTTTTGCCTT TGCATAACTT GAGTATTTTC AACACGTTGA
  ACCCGTCAGT TGTCAGTCCC CCCCCCCCCC CGTCTTAACA CACTCATTGC ATTTTTTTAA
  M
  AGATTAAAAC ACTCTTAATG CCAAAATTTG AATAACAATT CCCTATTTTT CTGAACTGAA
  TTTTGTAGTT TAATGTTATT ATGCAGCTTT GGATCTGCCT TTTTAAAGAG AGGAAGTTTC
  TGGAAGCTGA AAAGTTTTAC CCAATAATGG TAAAATACTC TGTATAATTT CAAGTGTGCC
  CAACTGGTAT TCGGTTTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349860998	MGP_WTSI_1_63245206	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228464877					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349860998	MGP_WTSI_1_63245206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63237791 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	1551 bp proximal
Gm56066	predicted gene, 56066	476 bp downstream
Platr12	pluripotency associated transcript 12	1596 bp upstream
Rr188	regulatory region 188	991 bp proximal
Rr371405	regulatory region 371405	1344 bp upstream
Tssr7060	transcription start site region 7060	1935 bp upstream
Tssr7061	transcription start site region 7061	1949 bp upstream
Tssr7062	transcription start site region 7062	1961 bp upstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	1726 bp upstream