rs228469568 SNP Detail

Summary

• ID
  rs228469568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:100751682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGTCC CCACGGCCTG
  ACACGGGACA GACATCTGTC CCGCCTTCGA ATGGGAGCTT CAGAGGGAGC AGGGACAAGG
  GATCCGTGCA GGCGGCAGCC AGGGGTGGAC TCACGCAGTG GACACTGACA TTATCACACT
  CCACTCGGAG CGGGTAGATT CTGGAGTGCA GCCCAGGGCT TCCCCGAAGA CAGCGTGGAC
  Y
  CTTAGTCTTC TCTCCCTGAC AGCCCCAGAC ACGTGCCTGG GGAGACCTGC ACCTCCAGTG
  GCTGTCCCAG CATTGGCCTA ACTTTTAGGT TGGAACAGTC TCCCTTCCAA GAAATTGAGT
  GTGGGTCTTA GGCTGGGTGG CAAGAATTTT TGTGTTTGTC TAGTTAGGGA CTGTGGGCCT
  CTGTGTCTTA AGTTTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384467525	MGP_WTSI_11_100722170	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228469568					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384467525	MGP_WTSI_11_100722170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100751682 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3835	CpG island 3835			within coordinates
Gm72578	predicted gene, 72578			320 bp upstream
Rr456792	regulatory region 456792			1190 bp distal
Rr456793	regulatory region 456793			362 bp distal
Rr456794	regulatory region 456794			706 bp distal
Rr456795	regulatory region 456795			within coordinates
Stat5a	signal transducer and activator of transcription 5A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr104969	transcription start site region 104969			1373 bp downstream
Tssr104970	transcription start site region 104970			1350 bp downstream
Tssr104971	transcription start site region 104971			971 bp downstream
Tssr104972	transcription start site region 104972			740 bp downstream
Tssr104973	transcription start site region 104973			671 bp downstream
Tssr104974	transcription start site region 104974			583 bp downstream
Tssr104975	transcription start site region 104975			554 bp downstream
Tssr104976	transcription start site region 104976			512 bp downstream
Tssr104977	transcription start site region 104977			506 bp downstream
Tssr104978	transcription start site region 104978			428 bp downstream
Tssr104979	transcription start site region 104979			319 bp downstream
Tssr104980	transcription start site region 104980			202 bp downstream
Tssr104981	transcription start site region 104981			1299 bp upstream