rs228472284 SNP Detail

Summary

• ID
  rs228472284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25151686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCAGCA ATGCCAGGCC
  TCAGCTGGCT GTGGTCTATA AGGCAGACAA AGGAAAAACA CATCACCAGT CTGTAGCCCC
  CACCTTCCTA ATGCCTCCAA GCAGTTGCCC TACTGTGTAT GCTGGGGAGG GGTATATATT
  GCATACTATG CAGCGATACC CAAAGAAACT TTTCAAGACT TATCTGTCAT GAGATTATGG
  Y
  CCTTCAGAGT CACTAACCCC CTGTCCATTC TTGGAAGTTG GTGTTTCAAC AGGAGTTAGT
  GGGACCTTTA CCCTTGTTTT TGTACTTTTC TGCATGACAG ACTGCCTAAA TGTGTGAGGC
  TCAGTTGTTG TTGTTGTTGT TGTTGTTTTT CCGAGACAGG GTTTCTCTGT ATAGCCCTGG
  CTGTCCTGGA ACTCACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353405707	MGP_WTSI_2_25117194	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228472284					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405707	MGP_WTSI_2_25117194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25151686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	589 bp proximal
Rr396819	regulatory region 396819	615 bp upstream
Rr553041	regulatory region 553041	454 bp proximal
Tprn	taperin	944 bp upstream
Tssr16679	transcription start site region 16679	860 bp upstream
Tssr16680	transcription start site region 16680	882 bp upstream
Tssr16681	transcription start site region 16681	915 bp upstream
Tssr16682	transcription start site region 16682	1525 bp upstream
Tssr16683	transcription start site region 16683	1538 bp upstream
Tssr16684	transcription start site region 16684	1618 bp upstream
Tssr16685	transcription start site region 16685	1685 bp upstream
Tssr16686	transcription start site region 16686	1698 bp upstream