rs228474556 SNP Detail

Summary

• ID
  rs228474556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATGCTG CTCAGAGGAG
  CCTAGCAGGT CCCAAGTGAC CTGCTCACAC CTTTTGACAT CTTTGTTTAC ACTTTTAAAC
  CTCTCAGTAG AGTCTGTTTA ATTCTTATCT GGGCCCTGCA GAGGTGATAG GTTTGAGTCC
  CAATGTCCAG CAGAGGAAAA GAAGGTTTTG CCTTTTAGGT GGCCACGGGG TCAGCAGGTG
  R
  AGGACCTGTA GGTGTCTGGT GTGTCCCAGT CCTCGAGATA ATAAAAGCTG AGCAGAACTT
  GTCATTATTA TGCAAAGCTG GGCAGGAGGC TTGGACTCTC CCTCGCAGAA GGCAGAAGCC
  CATCTGTCTT TGCACGCCTC CCCCCACGCT CAGAGGCCTG CTGAGAACTG AGCCCTGGGT
  GGGTGAAGGA GATGCGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439889	CHEV_2_102497951	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228474556					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	800 bp proximal
Gm57687	predicted gene, 57687	1906 bp upstream
Rr561712	regulatory region 561712	1129 bp distal
Rr561713	regulatory region 561713	375 bp proximal
Rr561714	regulatory region 561714	997 bp proximal
Rr561715	regulatory region 561715	997 bp proximal
Rr561716	regulatory region 561716	1498 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	865 bp upstream
Tssr19098	transcription start site region 19098	434 bp upstream
Tssr19099	transcription start site region 19099	486 bp upstream
Tssr19100	transcription start site region 19100	782 bp upstream
Tssr19101	transcription start site region 19101	846 bp upstream
Tssr19102	transcription start site region 19102	883 bp upstream
Tssr19103	transcription start site region 19103	932 bp upstream
Tssr19104	transcription start site region 19104	958 bp upstream
Tssr19105	transcription start site region 19105	1024 bp upstream
Tssr19106	transcription start site region 19106	1049 bp upstream
Tssr19107	transcription start site region 19107	1060 bp upstream
Tssr19108	transcription start site region 19108	1103 bp upstream
Tssr19109	transcription start site region 19109	1139 bp upstream
Tssr19110	transcription start site region 19110	1419 bp upstream