rs228484257 SNP Detail

Summary

• ID
  rs228484257
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103686110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC CGTGAAATCA TGCTGGACTA
  S
  ATTGGGGGTT GGGGGAGGGA AGAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320858428	CHEV_3_103582717	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228484257					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103686110 () rs orientation: forward

Symbol	Name	Function Class
Gm15886	predicted gene 15886	1569 bp downstream
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69882	regulatory region 69882	1310 bp distal
Rr367513	regulatory region 367513	529 bp downstream
Tssr34850	transcription start site region 34850	1983 bp upstream
Tssr34851	transcription start site region 34851	643 bp upstream
Tssr34852	transcription start site region 34852	617 bp upstream
Tssr34853	transcription start site region 34853	593 bp upstream
Tssr34854	transcription start site region 34854	517 bp upstream
Tssr34855	transcription start site region 34855	468 bp upstream