rs228485236 SNP Detail

Summary

• ID
  rs228485236
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20809021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC ACCTTCCTCC TTGCCACAGC
  T
  TTTGATGCCT TCCGGGTCTC AATCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322873586	CHEV_9_20702169	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228485236					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20809021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	90 bp proximal
Eif3g	eukaryotic translation initiation factor 3, subunit G	within coordinates
Rr674623	regulatory region 674623	888 bp proximal
Rr674624	regulatory region 674624	950 bp proximal
Tssr2789	transcription start site region 2789	846 bp downstream
Tssr2790	transcription start site region 2790	851 bp downstream
Tssr83934	transcription start site region 83934	161 bp upstream
Tssr88339	transcription start site region 88339	1542 bp upstream
Tssr88340	transcription start site region 88340	867 bp downstream