rs228485565 SNP Detail

Summary

• ID
  rs228485565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4004006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACACACTC CTTGCTCTTG TTTGGGAGCT
  TGGTGTGTTC TCTCATGGCA CAAAAGGAAA AGATTTTTGG ATGCCAATCA GAAAAGCTGA
  ACTCTCAAAG GAGCCCTGGA ATCCCCCAAA CAAAACAAAG CAAATAGACA AGCAAACAGC
  K
  TCTAACTGGG GAGTGAAGTT CCTTCAGCTG GTAGATTAGG CAGGCACCCC GACTGGTCTG
  GTACAGGCCT GGTCCTGCTG CCAGCCACAG CTCTCTTCAC AAGTTTTGCT CTTTGTGCTG
  GCTCAGGTAG ATGCCACTGC AGGTCTGTTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873011	CHEV_12_3954006	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228485565					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4004006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4369	CpG island 4369	636 bp proximal
Pomc	pro-opiomelanocortin-alpha	945 bp upstream
Rr366691	regulatory region 366691	441 bp upstream
Rr462232	regulatory region 462232	1360 bp proximal
Tssr112541	transcription start site region 112541	937 bp upstream