rs228492690 SNP Detail

Summary

• ID
  rs228492690
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60962759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAATTAA ATTCAGCAAG
  AACATATTTT CTTGGTGACT GTGCCAATTC TTCCTCTTAA AATTATTTTT AATTTTCATG
  TGCATACATG TTAGTCGTAA GTGCCTGAAA AGGCCAGAGA CATCACATCC CTCCAAGTTA
  CAAGTGGTTG TAAACCACCC AGTGTGGGTG CTGGGAATGG AACAAGGGTC CTTAGTGCTC
  K
  TAGCCCTTGG TTATCTCTCT AAGCCCAACT GTGTTGGTTC TTAGGAAGAC AATGGGAATC
  CCGGAGTTCT GTAAATTCTC TATTTCCAAA GACAGAATAA TAACAAAGTA AAACAGGTCA
  TGACAAGTTT TTGGGGTAGG CAACCAAGTG ATCATGGAAA TTACTTTTGG CTTAATCTTA
  ATAGGTTTCT ACAAACAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327731	CHEV_10_60589728	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228492690					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60962759 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1745 bp upstream
Rr219927	regulatory region 219927	642 bp proximal
Rr228137	regulatory region 228137	1243 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates