rs228497408 SNP Detail

Summary

• ID
  rs228497408
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92490449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGAAAAA CTTAAAACTT
  TTGCCTAATA TCCTCTCAGT GGTGAGTGCA AAATGAATCT TAGTGAATGT ACAGAAATAA
  AAAAAAAGCC TTAAAAAGAG AGAGTAGAGC ATTAGTCAGT ATTGGAAAGA AATATAAATG
  AAATGGGTTA AGATTCTTAA ACTGATTTGC AACTGCAGTA AAATACAGGA GATGCCCGTT
  M
  CAATCACCTT CTACATCTTC AGTCTGGGAA ATGACCGAGG CCTTAACTCA CCCTGAACAA
  GTGTGACACA TTGCCAGCTA GTGTGGGAAA CATCCTTGGG CCTGTGTTTG TGGCAGTATC
  ACGATGGGGT TTTGGTTTTG TTTCTCTTTG CTTTGCTTTG AACTATCTGA TGGGCTGCAA
  GCAACAGGAA GTAGCCAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389492686	MGP_WTSI_13_93123896	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228497408					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389492686	MGP_WTSI_13_93123896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92490449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	432 bp proximal
Dhfr	dihydrofolate reductase	842 bp upstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	559 bp upstream
Rr483661	regulatory region 483661	295 bp proximal
Rr483662	regulatory region 483662	576 bp proximal
Rr483663	regulatory region 483663	726 bp proximal
Rr483664	regulatory region 483664	1034 bp proximal
Tssr120622	transcription start site region 120622	807 bp upstream
Tssr120623	transcription start site region 120623	1198 bp upstream
Tssr120624	transcription start site region 120624	1245 bp upstream
Tssr120625	transcription start site region 120625	1271 bp upstream
Tssr120626	transcription start site region 120626	1298 bp upstream
Tssr123429	transcription start site region 123429	562 bp downstream
Tssr123430	transcription start site region 123430	1002 bp downstream