rs228502389 SNP Detail

Summary

• ID
  rs228502389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58955883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGCCCA GTCGCTGCTT
  CAGCTGCTGT TGCTGCTTCT GCAGCGCTCT GCTCCCTGCG CTTGCTACGG GAGGCCGGGG
  AAGCCGCGCG GACAGTCCTC GGTGGCCTGG GCCGGCACTG TCCTGCTACC GCAGTTGCTC
  CCCAGGTGGG ATGTGCCGCG CCACCTGCCC ACCTCCCCTC TCCCCCCGCG CCCAGCGGCC
  R
  GGGAGGATTC TGCAGCATCA TTGGGGCCCC AGCGCTGCCG CAGCCTCTTT GGAGGGTCCT
  TGGCTTGGCC TATGCCATGG AATCTGCTCT CAAAGACCCG TTACCGACTT CTCATGCCTC
  GGCCTCAGGC TTGAAGGGAG GGCGGGCACA CGGGGGGGGG GCACTAAGGG GCAAGTTGAT
  GGCGGGGCGG GAGCTGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388772364	MGP_WTSI_13_58909430	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228502389					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388772364	MGP_WTSI_13_58909430	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58955883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr273002	regulatory region 273002	1483 bp distal
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	1447 bp downstream
Tssr120083	transcription start site region 120083	1414 bp downstream
Tssr120084	transcription start site region 120084	369 bp downstream
Tssr120085	transcription start site region 120085	231 bp downstream
Tssr120086	transcription start site region 120086	186 bp downstream
Tssr120087	transcription start site region 120087	167 bp downstream
Tssr120088	transcription start site region 120088	194 bp upstream
Tssr120089	transcription start site region 120089	614 bp upstream