rs228502853 SNP Detail

Summary

• ID
  rs228502853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31239761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAAGTC CACTCTCTAG
  AGGAGACCAG CTGGTAATAT TAGGAGACAA ATTTGTATTT GATTTTGTTT ATTATTTATT
  TATTAATTTA TTTAAATAAT AGGAGACAAC TTTTTCTATG ATTTTTTAAA AATTTCTTAT
  TTGTTTATTT TGGTCTTTTG AGACAGAGTC TCACTGGTCT AGGACTCATG GAGATTCAAA
  Y
  GCTTCTGCCT CCTGAGTTTT GGGATTAAAT GTTCGTACTA CTATACCTGG CTCTATTTTA
  CAGTGTGTGT GTGTGGGGGG GGGGGGTTTG TGTGTGTATG CACGAGTATA TGTATGTGTA
  TATGTGTGGT ATGTATGTGT ATGTATATTG TGGTGTGTAT GTATGTGAGT GTGTGTGTGT
  GTGCATGTGT ATATGTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325134036	CHEV_16_31421029	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228502853					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31239761 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	1354 bp upstream
Rr514473	regulatory region 514473	1128 bp distal
Rr514474	regulatory region 514474	1127 bp proximal
Rr514475	regulatory region 514475	1348 bp proximal
Tssr137893	transcription start site region 137893	1325 bp upstream
Tssr137894	transcription start site region 137894	1345 bp upstream
Tssr137895	transcription start site region 137895	1372 bp upstream
Tssr140755	transcription start site region 140755	425 bp downstream