rs228507594 SNP Detail

Summary

• ID
  rs228507594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136146994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAACACTG TCCCCAAGAC CTGTATTTCC
  TTATAGGTca gtggctctaa accttcctaa tgctgcgacc ctttaataca gttcctcata
  ttctagtgac cccctaactg caagatcatt tttgttgcta cttcataacc ataattttgc
  Y
  actattatta cttgtaatat aaatatctgt ggttttcgat ggtctaatgc aacccctgtg
  aaatggtcat taggctccct cccccaaagg aatcgtgacc cacaggttga gaaccactgC
  TATAGGAGAT TGTAtgttta cagcaatgtt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319995081	CHEV_1_138115833	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228507594					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136146994 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	1128 bp downstream
Tssr9051	transcription start site region 9051	1474 bp upstream