rs228514136 SNP Detail

Summary

• ID
  rs228514136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47888538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTTAT TTTATTGGTA
  TATTTCTATG ACCTCCCTAA GTATTAGCAG CCTCTTTCTC TGATATAGTT TCCCCCTAAA
  CAAATCTAAT AAGCAAAATC CACACAAACC CCTCACCCCC CGAGCAGTGT ACAGGCTTGC
  TAGTTTGTAG GTTTTGATCT TTTGTTAGAT TTTGATAAAG ACCTAACAAG TAAAGGGCTT
  R
  TTCTGAGGCT CAGCTTCTAG AGGACGCATG GTAAGATTGA CCGTCAGTCA GTCTTTAGCT
  GGAATTTTAC TTGAACTCTT TGGAGGATGT ATCGTTTTTC CAGGGAGGGA CTCACTGGGG
  TCAGCCAGAA ACTTGAGCAT GCCATATATA CTTTTGACAC CTCTAGCCCT CGAATATGTA
  TTTTTGTTTG TATGCCTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324597850	CHEV_14_48270756	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228514136					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47888538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	922 bp distal
Ktn1	kinectin 1	within coordinates
Rr297095	regulatory region 297095	337 bp distal
Tssr125323	transcription start site region 125323	1961 bp downstream
Tssr125324	transcription start site region 125324	1692 bp downstream
Tssr125325	transcription start site region 125325	692 bp downstream
Tssr128337	transcription start site region 128337	1817 bp upstream