rs228515488 SNP Detail

Summary

• ID
  rs228515488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTAT GTGTGTGTAA GATCACCAGA GCTTCAGGTC CAGGAATATA TGAACTATAG
  GCAAAAAGGG ATTCTTGAAC TGTGTTGGTC CAGGTTGGTG GAGTTCTTGG TTCAAGGCAA
  AAGGAGAAAG CTGATAATGC CCACAGTCAA CATTAAAGAC GATTGTGCCA GCCAGCTCAC
  R
  AGGGAGGGGA GCGTTTATTT CTGAAACTTG CACTCTTAGA GGTGTTATTT CATGGCCTGT
  CTGCCCTGTC ATTTTTGAGC CTGTGCTGAG ATACATCATG GAGAGAGTGC ATAGTGGAGG
  AAACTGCTCA CTTCTCGCAT CTAGGAAGCA AAGAAGATAG CAAGAACCAT AAACCTAATA
  GTTCATTTAA GGGTGTATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121697	CHEV_7_26199183	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228515488					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113589 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1278 bp upstream
Tssr2143	transcription start site region 2143	1362 bp upstream
Tssr2144	transcription start site region 2144	1214 bp upstream
Tssr2145	transcription start site region 2145	1190 bp upstream
Tssr2146	transcription start site region 2146	1177 bp upstream
Tssr2147	transcription start site region 2147	1132 bp upstream
Tssr71243	transcription start site region 71243	1348 bp upstream
Tssr71244	transcription start site region 71244	1323 bp upstream
Tssr71245	transcription start site region 71245	1308 bp upstream
Tssr71246	transcription start site region 71246	1279 bp upstream
Tssr71247	transcription start site region 71247	1251 bp upstream