rs228524358 SNP Detail

Summary

• ID
  rs228524358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84070568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACTCGGA CCATCGGCAT
  CGCCTCACGT CGCCCCGCCC CGCGCCGCGC GCCCATTGGC TGACGCGGGC CCGAGCCCGC
  GCCTCGCCCC CTCCCACTGG CGCCCAGACC GCGCGGCTGC CCGGAGCGGG GTCGGAGGTG
  AACGGCCTGG AGTAACCCCG GACGCGCGCG GACCTAATGG GGCTGGGCGG CTGAGGTGGG
  Y
  GGCCGGGCGG GGGCGGGCCG GGGGCGGGGC AGTCCACCGA AGCCCCGCCC TCCTCGGCCC
  CGGTGCCGGG CCGGCCTGCT GAGCGCCTGT CAGCCATCGC CGAGCCGCCG GCGTCGCCTC
  CCGCCCAGCA CATCTCGGCG CAGGGTCTCA GCGACCGTCG GTCCCTGCGT GCCGCCAGCC
  TGAGGTGAGG CGAGGGCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384086730	MGP_WTSI_11_83993244	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs228524358					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384086730	MGP_WTSI_11_83993244	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84070568 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	within coordinates
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	292 bp distal
Rr453132	regulatory region 453132	234 bp proximal
Tssr103798	transcription start site region 103798	85 bp downstream
Tssr103799	transcription start site region 103799	55 bp downstream
Tssr103800	transcription start site region 103800	50 bp upstream
Tssr103801	transcription start site region 103801	110 bp upstream
Tssr103802	transcription start site region 103802	124 bp upstream
Tssr103803	transcription start site region 103803	567 bp upstream