rs228528957 SNP Detail

Summary

• ID
  rs228528957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62441636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG GGCCCGTGGG CGGCTAAGCC
  R
  CAAGACAAAA CAACTAAAAA CACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323703949	CHEV_11_62364312	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228528957					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62441636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	within coordinates
Gm12279	predicted gene 12279	within coordinates
Gm71785	predicted gene, 71785	within coordinates
Rr246927	regulatory region 246927	within coordinates
Rr386162	regulatory region 386162	within coordinates
Tssr102022	transcription start site region 102022	265 bp downstream
Tssr102023	transcription start site region 102023	210 bp downstream
Tssr102024	transcription start site region 102024	within coordinates
Tssr102025	transcription start site region 102025	357 bp upstream
Tssr102026	transcription start site region 102026	424 bp upstream
Tssr102027	transcription start site region 102027	452 bp upstream
Tssr102028	transcription start site region 102028	638 bp upstream
Tssr102029	transcription start site region 102029	651 bp upstream
Tssr102030	transcription start site region 102030	683 bp upstream
Tssr102031	transcription start site region 102031	911 bp upstream
Tssr102032	transcription start site region 102032	928 bp upstream
Tssr102033	transcription start site region 102033	946 bp upstream
Tssr102034	transcription start site region 102034	964 bp upstream
Tssr102035	transcription start site region 102035	1038 bp upstream
Tssr108430	transcription start site region 108430	130 bp downstream
Tssr108431	transcription start site region 108431	183 bp downstream
Ubb	ubiquitin B	693 bp upstream