rs228532077 SNP Detail

Summary

• ID
  rs228532077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165470431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGGAA CGCGCCGCAG
  CCTTGCTCAG GGGACGAAAT CTTGGGGTAC TAGGAGCAGT GATCTTCCCC GAAATTCCAA
  CTTATTAAGT AAGCAGTTTG TACTGAAGCC ATTTGATGCT CAGTCCCTGA ACCACTCCTG
  TTGTCCCCTT GTGCAATGGA AGGGACAGAG GTCCAGAGAC CTTGTGGAGT TCCCGGAAGG
  R
  CCCCCGCGCT CCTGGAAGGA GGACCATAGG GGCTGGAGCG GGGAGACGGA CTGGGGTGGG
  GTGGGGGAGT GGGGGCACAA TGGCAGTGAG GCAGATCTCC CTCCGGCAAA TCTGAGCCTT
  AGGTCCTACT GTCCGGCCCA GCAGTACTCC TTACTCCAGG GTCTGAGGCT GGTCTCTGTC
  CCCAGCCAGG CGTCGAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320086960	CHEV_1_167572993	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228532077					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165470431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1037 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	1157 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	520 bp upstream
Rr396497	regulatory region 396497	1183 bp downstream
Rr396498	regulatory region 396498	478 bp downstream
Rr422408	regulatory region 422408	1278 bp distal
Rr422409	regulatory region 422409	within coordinates