rs228533912 SNP Detail

Summary

• ID
  rs228533912
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55886411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGGTGT GCAGAGTGGC
  AGGCAGGGCC TCGCAAGGTG TCACTTCCGT GTCACCGTGA CAAGAAAATA TACTTTCTTC
  CTCCCTCCCT CTCTCCCATT GCAGCCCTCT CCCTAAGAAA TTTGTTTTGA GGGATTTGAC
  AATCTTGCAG ATAAAGTGCC TGCCTGCTAC ACTGGTTCAT CATTTCCCTC ATGGCTGACC
  A
  TAATTTCTTT GCTGCTCTTA GCTCTGTCCC TGCCACCCAA GGTGAGGGAG GGGGACTTTT
  CTTAGGTGCC CTGAGCAGGT TGGGGGAAAT GGGCCTTCCC CCTCCTTCCT TTATGGGTCC
  TGGAGTAGTA AAGATTAGGG ACTAGAGGGG TTTTTACATT TAAAAAATAT TTAAATCGAA
  GCTTCAGCCA GCTGAATTAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325855119	CHEV_19_55972469	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228533912					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55886411 () rs orientation: forward

Symbol	Name	Function Class
Rr363576	regulatory region 363576	within coordinates
Tcf7l2	transcription factor 7 like 2, T cell specific, HMG box	within coordinates
Tssr157142	transcription start site region 157142	1559 bp downstream
Tssr157143	transcription start site region 157143	48 bp downstream
Tssr157144	transcription start site region 157144	29 bp downstream
Tssr157145	transcription start site region 157145	13 bp downstream
Tssr157146	transcription start site region 157146	284 bp upstream
Tssr157147	transcription start site region 157147	298 bp upstream
Tssr157148	transcription start site region 157148	617 bp upstream
Tssr157149	transcription start site region 157149	966 bp upstream