rs228537408 SNP Detail

Summary

• ID
  rs228537408
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128177783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGTGGGA GGCGGGGCCT
  CGGTGTGACG CCAGCGGCTG AGGGCGGAGC TCAGGGGTCC AGAGGGCAGA GCCCGGATGT
  GGAGAAATAG ACTGAGGGCG GGGCTTGGTG CGCGAGAGGC GGAGCCCGGT GGGGAGCAAC
  AGGACGAGGG CGGAACGTAG GCAGGCAAGA GGCGGAGCCC GGGCCTGAGG CACCAGTCTG
  W
  GGGCGGTGCT TGTTGCTCGA GAGTGGTGCA ATAACTGAAG GATAAACTTA ACAAAGTGTG
  AGAGGCAGAG CCCAGGGATT CAGTGGTCAG CTTGGGGTGG AGTTTAGAAC TGCCAGACTC
  TGTCTGTGGC CAGTGCCCAA GCTAGTCGTT CTAGACCATG GCTGGGAAGG TAGGAGCTGT
  GGCTGCTGTT TCCCGACTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370021627	MGP_WTSI_6_128150838	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228537408					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370021627	MGP_WTSI_6_128150838	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128177783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	within coordinates
Gm4691	predicted gene 4691	1330 bp downstream
Gm10010	predicted gene 10010	130 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	1359 bp downstream
Rr399953	regulatory region 399953	12 bp downstream
Rr639207	regulatory region 639207	506 bp distal
Rr639208	regulatory region 639208	249 bp distal
Rr639209	regulatory region 639209	102 bp distal
Rr639210	regulatory region 639210	within coordinates
Rr639211	regulatory region 639211	676 bp proximal
Tssr63410	transcription start site region 63410	250 bp upstream
Tssr63411	transcription start site region 63411	245 bp upstream
Tssr63412	transcription start site region 63412	228 bp upstream
Tssr63413	transcription start site region 63413	185 bp upstream
Tssr63414	transcription start site region 63414	170 bp upstream