rs228543735 SNP Detail

Summary

• ID
  rs228543735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:119393438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGCAAG GGAAGCGGGC
  GCTTGTAGAG CGGCGGCGGC CGTCGCCAGC GGTTTGTGGG CGTTGCATAG GGGGCGGTTC
  GGGACCCGGG GGCGTGGACA GAGGCTTGAG GACCGGGAGC CCCTCGCTCT GCGCACGACG
  CGCCTCAGGG AGCGCTTTAA ACTTCGCGAC GGCTTAAATT GAGGAAAGGA GGCGTAGGTC
  Y
  GTGGCCTTTT TTGCGAGGGC CAAGAGTGGT AAACTGGTTT GAGCCGCTTC AAGAGACAAA
  CCAACCGTCA CTCCTGTCTA GCGCTTTGCT GGAGAGAGGC CGCGACACGG TTTCCTGGTC
  GCCGCGGGGT CCTCAGCTCC AGCTGATCTT TCCCCTACAG CCTGATGGAG CAAGAGAAGG
  AGGAGGCGAA CTCCAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372922771	MGP_WTSI_7_126937729	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228543735					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372922771	MGP_WTSI_7_126937729	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119393438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19637	CpG island 19637			within coordinates
Eri2	exoribonuclease 2			155 bp upstream
Rexo5	RNA exonuclease 5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Rr654660	regulatory region 654660			259 bp distal
Rr654661	regulatory region 654661			195 bp distal
Rr654662	regulatory region 654662			75 bp distal
Rr654663	regulatory region 654663			1056 bp proximal
Tssr68757	transcription start site region 68757			463 bp downstream
Tssr68758	transcription start site region 68758			203 bp downstream
Tssr68759	transcription start site region 68759			170 bp downstream
Tssr68760	transcription start site region 68760			58 bp downstream
Tssr68761	transcription start site region 68761			53 bp upstream
Tssr74500	transcription start site region 74500			259 bp upstream
Tssr74501	transcription start site region 74501			223 bp upstream