rs228544741 SNP Detail

Summary

• ID
  rs228544741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACATTAT GCTGACCCTC
  AACATGTGCA AGGAAGAAAT AGAATCTTCA TTCATTCTCA GCTCCCATCT TCAATTTGTA
  AAGGTTGTAT CATTTACCCT CTCCCCTCAT CTCTCTGACA GGCTTTGTAT GATCTTGCAG
  AATTCAGGAA ATCTATTCAC CTGTTAATAT TCCCTTGAGA TTTTTAAAAC AAGCATAATG
  R
  CACACACTTT TTAATCCCAG CACTTGAATC TGTAATTTTC CAGGCCAACC ATAACTAAAC
  TGTGAGTTCA TGTGTCAACA TCCTAAAACT GGAAGATAAA TCTCTAAGAG TTGATTTTCA
  CATAGCCTTA TAAATACCTC TATTAGAAAA ATCACTTAGG TTGCCTCATC CATCTTTCAT
  TTTCAAAAGC ACATTTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044826	CHEV_6_142420359	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228544741					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417565 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	959 bp downstream
Tssr63951	transcription start site region 63951	974 bp downstream
Tssr63952	transcription start site region 63952	1005 bp downstream
Tssr63953	transcription start site region 63953	1058 bp downstream
Tssr63954	transcription start site region 63954	1121 bp downstream
Tssr63955	transcription start site region 63955	1150 bp downstream
Tssr63956	transcription start site region 63956	1236 bp downstream