rs228554739 SNP Detail

Summary

• ID
  rs228554739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95723949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGCCTG TGGGCAAGGT
  CAGTTAAGGA AGTAACCAAG GCTAGTTCAC TCCTGCTTGG TGATGATCCC TAGCCTTCCT
  AGCCGCCCCC CTCCCCAATG TGCATGCCTA GTTGTAGGAA GAGGAAGCTG CAGAATGGTC
  AGCCACTGAG GCCTTCTAAG GGCACCTTTT GTACCCACAG GTCTTCTGCT GGGCTGGCGC
  Y
  CAATGCCCAC AGCTCCCCTC CCTCAGTTTC CCCATGGGGC AGGGCTTGGC AGAGGGTATT
  GCAGCTCATG GATGTTGGCA GGAAATCACA AGAAGGTGAG ACCTGTGCTA GCTGAGTAGT
  CCTATATAGC AAGGCTGGGT CTAGATGGTC CTACCTACAG CCATGCTCAG TGTGGTAGCT
  CAGGCCTATA AACCTGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322809845	CHEV_8_97521221	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228554739					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95723949 () rs orientation: forward

Symbol	Name	Function Class
Adgrg1	adhesion G protein-coupled receptor G1	within coordinates
Tssr78951	transcription start site region 78951	1700 bp downstream
Tssr78952	transcription start site region 78952	1627 bp downstream
Tssr78953	transcription start site region 78953	1573 bp downstream
Tssr78954	transcription start site region 78954	1560 bp downstream