rs228558521 SNP Detail

Summary

• ID
  rs228558521
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10584916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCAACTG TATCCAAAAC
  AAAAAAACCC CAAAAAACCA TGAATGTTTT TGAGGACTGT TAGTAAAGAT CTATTGTAGC
  TTTGCTTGTT ATTACTACAG ATTACTTTCT CTCCACATAC ATAGGTGAAG GAGAAACATT
  TCATTCTCTT CTCAAATCTT GAATAGAATG AGGTGAATTA TAGAGGACTT TGCTTGTAGA
  S
  CAGAGAGAAA GAGAGCTGAA ATTGCAAGGC CTAGATGCTT ACCAGCCTCA GTCCTGGCCT
  TTTGTACATC CCCTTAGGGT CTTGTGCGAG CTTAGTACAT GTTACAGGCT CGCTTAGTAT
  TTCCTCTGTG TGGCGAGTAG AACTTGGAAG ATTCTTTAAA AGCTTAGAAT ACTTAAAGAA
  TGGTGTTAAG GCTGAACAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401732858	MGP_WTSI_19_10682042	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228558521					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401732858	MGP_WTSI_19_10682042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10584916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	1499 bp distal
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	within coordinates
Rr405857	regulatory region 405857	1896 bp downstream
Tkfc	triokinase, FMN cyclase	1898 bp upstream
Tssr155068	transcription start site region 155068	1998 bp downstream
Tssr155069	transcription start site region 155069	1938 bp downstream
Tssr155070	transcription start site region 155070	1908 bp downstream
Tssr155071	transcription start site region 155071	1857 bp downstream
Tssr155072	transcription start site region 155072	1604 bp downstream
Tssr155073	transcription start site region 155073	1264 bp downstream
Tssr155074	transcription start site region 155074	240 bp upstream
Tssr155075	transcription start site region 155075	695 bp upstream
Tssr158207	transcription start site region 158207	1637 bp upstream