rs228571387 SNP Detail

Summary

• ID
  rs228571387
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70215027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTAAATG CATCTTGCTT ATATAGTCAG AGAATATTCT
  ATTTGATTCT AATTTTAAAA ATATAGCTAT GCTACCATCC CAGTGCTAAT ATTTGTTTAT
  K
  GGTTGCACAA TTTTACAATA ATCATAGTTC ACGTATCCCC CCATTGATAC ATGTTCTCAT
  TATACTCCAT TTAGCCCAGG CTGCCCGGAA TTGCAGTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735041	CHEV_11_70137703	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228571387					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70215027 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	1573 bp upstream
Cpgi3180	CpG island 3180	1778 bp distal
Tssr108941	transcription start site region 108941	1725 bp upstream
Tssr108942	transcription start site region 108942	1687 bp upstream
Tssr108943	transcription start site region 108943	1664 bp upstream