rs228572836 SNP Detail

Summary

• ID
  rs228572836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110009426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTTTAG TCCTAAATGT
  GCAAGGCAGG GCCCTCCTTG GCCTACTTTT TTCATTCTTC ACTGTTACTC CTCCCAGCCT
  TCCTCCCTTC CCATCTATCG CATTACCCAG ACTTTTATAC TCCTCTGAGA CAGCCCCTTG
  CTGTGGTTGG GACCATCCTG AATGATTTGC ATGCCCAGCT CACAGTTGAT CCATAGTGGA
  R
  CTGGGCTGAG GGACCCTAGA GCTTTTCACA AAGTGGTTCT CAGGCCTTGT GCCAGGTTGA
  GCACACTGTA AGTGCTCAAT GCACAGTAGC TAGTTTCTTT TTCTGCCTGA AGGCAGAGCA
  CACCCCACCC TGGGGGTTCT GAATTGTGAA GCCTGAAGGT GCATTTGCCC TCTGCTCCCT
  CTGGAGGCTG CTCTGTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255184	CHEV_4_109824834	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228572836					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110009426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	290 bp proximal
Gm33070	predicted gene, 33070	440 bp upstream
Rr84118	regulatory region 84118	within coordinates
Tssr38368	transcription start site region 38368	424 bp upstream