rs228574069 SNP Detail

Summary

• ID
  rs228574069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96515400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGCTGT ACTACTGAAG
  AAAATGTCTC TTCCGGCAAC CGTCAACTGT CAAAAATCCT TGTAAATCCT CCTGCACCCT
  ACCACAGGAT GTTGGCTCCC AGTATTGCAC GGATCTTGTA TAGTACAGAC AACCACAGCT
  GCTGTCAGGT AGAATGGCTG AAGAGATGGC TGAAGGGTTT AGAGCACTTA GAGAAGAGTT
  Y
  CCAGCACCCA AGTGGCAACT CACAATGCTC TGTAACTCTA GTTCCAGGGG ATCCTACTCC
  TTCTGACCTT CAGGGACACT AAGCACTCAT TATGGTATAC ATACATGCAA GTAAACACTC
  ATACACATAC AAATAGAAAT ATCTTTGTAC AAAAAATGTG ACAGCCATGT CATGTCATGC
  CAAGAAAATT CCACCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111058	CHEV_9_96533766	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228574069					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96515400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	1364 bp distal
Rasa2	RAS p21 protein activator 2	1735 bp upstream
Rr684997	regulatory region 684997	1240 bp distal
Rr684998	regulatory region 684998	1885 bp proximal
Tssr90976	transcription start site region 90976	1793 bp upstream