rs228574161 SNP Detail

Summary

• ID
  rs228574161
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47720879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTCTAG GCGCAAAGCT
  TTTAAGAGTC AAGATTCAGG CTGTATTGCT TTTATTTACG AAATTATAAC AAAAATTAAA
  GTTCTTGACT AGTTATAGTT CCCCTTCCTG AAACGCAAAT TTTTGGGGGT GTTTTGAAGG
  GAAAAAAAGA AAGACAGTGA GATACTAGCT GGTTTATTTG TCGTGAAAGA AACAGGACTT
  S
  GTTACTTCCC CATGTGGAGA GGTAAATGGA AAATATGAGA AGAATTAGAA TAAATTATAG
  CTACATGTAA TTGGAAGAAA TGGCTGACTA TTTTTGGTGT TTAGTTCACT GAAGAAAATT
  TTGTTCAGAA AAATTGAGGT CTGTTTTGAG ATAATTTGAT TATCATTCGC GTCTTTTCTT
  TTTGATAAGG AAATCAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325827259	CHEV_19_47806930	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228574161					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47720879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	319 bp distal
Gm58934	predicted gene, 58934	881 bp upstream
Rr370527	regulatory region 370527	1166 bp downstream
Rr406020	regulatory region 406020	201 bp downstream
Rr549123	regulatory region 549123	892 bp distal
Rr549124	regulatory region 549124	1222 bp distal
Rr549125	regulatory region 549125	1081 bp distal
Rr549126	regulatory region 549126	953 bp distal
Rr549127	regulatory region 549127	748 bp distal
Rr549128	regulatory region 549128	within coordinates
Sfr1	SWI5 dependent recombination repair 1	within coordinates
Tssr156884	transcription start site region 156884	672 bp downstream
Tssr156885	transcription start site region 156885	643 bp downstream
Tssr156886	transcription start site region 156886	505 bp upstream
Tssr156887	transcription start site region 156887	1212 bp upstream