rs228575735 SNP Detail

Summary

• ID
  rs228575735
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173109064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCCCAC CCTGGAAGGG
  GAGCCTGATT CAAGAGAATT GTCTCTTCTA CCTGTCTCCC GCTCCCAGGC AGAGTCCCAC
  TTAGCATCGA CGCCTACACC CCCATGCCGT TCACCGAATG CTTGCTTCTC ACTGAAGAGC
  TTCACGGATA ACTTCTCTAA TAATCACTTC AGCACAGGAA CTAGGAGGCT CTCAGAACAG
  M
  AAGAGCTACA GCAAGGTGGG CTGAGCTTAC CAAAGATCCC ATGGTTTGAG ACTGCCAGAG
  CCAGATAGAT CCCTTAGGGA CCTTTCTGTT TGGTGGGACA CAGTTTGGTG GGACACTTTT
  TGGTAGGACT GTTTGGTGGG ACACTGCTTG GTGGGACATG GTTTGGTGGG ACACTGTTTG
  GTAGGACACG GTTTGGCGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320622167	CHEV_2_173092772	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228575735					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173109064 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1661 bp distal
Rr571917	regulatory region 571917	119 bp distal
Tssr27982	transcription start site region 27982	1332 bp upstream