rs228577855 SNP Detail

Summary

• ID
  rs228577855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106481008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTTCAC TACACCCCAC
  ATCCACTCCG TTTACAGTGG GTGGGCTCCA CATAGCTCTC TTCCTTCCTG TGTCTTACCC
  GGGGTACCTC CTGGTCCTGT GGCCTGCATA GCCCCCAGTA GCTCTCAGAT TTGCTTTGAA
  ATTTCCCTTT GAGGGATGCC TCCATGGTTC CAGGCTGGTC ACAGCACCCT CACAGCTTCC
  Y
  CAGCCCTGTT CCAATTGTCC CTCAAGCCTG TCCCTCCAGC TCTGTCTCAA CAGTTTGGAG
  AGGGGGCACA ATGGTCGTCT GAGTGTCACT GGATCACAGT GATTCTCAAA AGTCCTGGCA
  CTAAATAGAT CCTAGCATAC TTGTCGTTTA TCCTGCAGTA CAAGAGTCCT ATGTGCAGCA
  GCCTATACAA TAAGCATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246860	CHEV_4_106296416	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228577855					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106481008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	578 bp distal
Rr596780	regulatory region 596780	1369 bp distal
Tssr38185	transcription start site region 38185	1334 bp downstream
Tssr38186	transcription start site region 38186	1300 bp downstream
Tssr38187	transcription start site region 38187	1269 bp downstream
Ttc22	tetratricopeptide repeat domain 22	within coordinates